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ncRNAtools

An R toolkit for non-coding RNA

Bioconductor version: 3.23 · Package version: 1.22.2

ncRNAtools provides a set of basic tools for handling and analyzing non-coding RNAs. These include tools to access the RNAcentral database and to predict and visualize the secondary structure of non-coding RNAs. The package also provides tools to read, write and interconvert the file formats most commonly used for representing such secondary structures.

Installation

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("ncRNAtools")

Details

MaintainerLara Selles Vidal <lara.selles@oist.jp>
AuthorLara Selles Vidal [cre, aut] (ORCID: <https://orcid.org/0000-0003-2537-6824>), Rafael Ayala [aut] (ORCID: <https://orcid.org/0000-0002-9332-4623>), Guy-Bart Stan [aut] (ORCID: <https://orcid.org/0000-0002-5560-902X>), Rodrigo Ledesma-Amaro [aut] (ORCID: <https://orcid.org/0000-0003-2631-5898>)
LicenseGPL-3
Bug Reportshttps://github.com/LaraSellesVidal/ncRNAtools/issues
Downloads rank266
Source branchRELEASE_3_23
biocViewsDataImport, FunctionalGenomics, Software, StructuralPrediction, ThirdPartyClient, Visualization

Documentation

Download

Dependencies

Imports: httr, xml2, utils, methods, grDevices, ggplot2, IRanges, GenomicRanges, S4Vectors

Suggests: knitr, BiocStyle, rmarkdown, RUnit, BiocGenerics