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ncGTW

Alignment of LC-MS Profiles by Neighbor-wise Compound-specific Graphical Time Warping with Misalignment Detection

Bioconductor version: 3.23 · Package version: 1.26.0

The purpose of ncGTW is to help XCMS for LC-MS data alignment. Currently, ncGTW can detect the misaligned feature groups by XCMS, and the user can choose to realign these feature groups by ncGTW or not.

Installation

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("ncGTW")

Details

MaintainerChiung-Ting Wu <ctwu@vt.edu>
AuthorChiung-Ting Wu <ctwu@vt.edu>
LicenseGPL-2
Bug Reportshttps://github.com/ChiungTingWu/ncGTW/issues
Downloads rank248
Source branchRELEASE_3_23
biocViewsAlignment, MassSpectrometry, Metabolomics, Software

Documentation

Download

Dependencies

Depends: methods, BiocParallel, xcms

Imports: Rcpp, grDevices, graphics, stats

LinkingTo: Rcpp

Suggests: BiocStyle, knitr, testthat, rmarkdown