mzR
parser for netCDF, mzXML and mzML and mzIdentML files (mass spectrometry data)
Bioconductor version: 3.23 · Package version: 2.46.0
mzR provides a unified API to the common file formats and parsers available for mass spectrometry data. It comes with a subset of the proteowizard library for mzXML, mzML and mzIdentML. The netCDF reading code has previously been used in XCMS.
Installation
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("mzR") Details
| Maintainer | Steffen Neumann <sneumann@ipb-halle.de> |
| Author | Bernd Fischer, Steffen Neumann, Laurent Gatto, Qiang Kou, Johannes Rainer |
| License | Artistic-2.0 |
| URL | https://github.com/sneumann/mzR/ |
| Bug Reports | https://github.com/sneumann/mzR/issues/ |
| System Requirements | C++11, GNU make |
| Downloads rank | 4739 |
| Source branch | RELEASE_3_23 |
| biocViews | DataImport, ImmunoOncology, Infrastructure, MassSpectrometry, Metabolomics, Proteomics, Software |
Documentation
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Dependencies
Depends: R (>= 4.0.0), Rcpp (>= 0.10.1), methods, utils
Imports: Biobase, BiocGenerics (>= 0.13.6), ProtGenerics (>= 1.17.3), ncdf4
LinkingTo: Rcpp, Rhdf5lib (>= 1.1.4)
Suggests: MsDataHub, RUnit, mzID, BiocStyle (>= 2.5.19), knitr, XML, rmarkdown
Reverse dependencies
Depends On Me (1): MSnbase
Imports Me (13): Aerith, CluMSID, lcmsPlot, MSnID, msPurity, peakPantheR, RMassBank, sfi, SIMAT, TargetDecoy, topdownr, xcms, yamss
Suggests Me (18): AnnotationHub, Chromatograms, chromConverter, erah, MetaboAnnotation, MsBackendMetaboLights, MsBackendRawFileReader, MsBackendSql, msdata, MsDataHub, MsExperiment, MsQuality, PSMatch, qcmetrics, RforProteomics, Spectra, SpectraQL, SpectriPy