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mumosa

Multi-Modal Single-Cell Analysis Methods

Bioconductor version: 3.23 · Package version: 1.20.0

Assorted utilities for multi-modal analyses of single-cell datasets. Includes functions to combine multiple modalities for downstream analysis, perform MNN-based batch correction across multiple modalities, and to compute correlations between assay values for different modalities.

Installation

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("mumosa")

Details

MaintainerAaron Lun <infinite.monkeys.with.keyboards@gmail.com>
AuthorAaron Lun [aut, cre]
LicenseGPL-3
URLhttp://bioconductor.org/packages/mumosa
Bug Reportshttps://support.bioconductor.org/
Downloads rank294
Source branchRELEASE_3_23
biocViewsImmunoOncology, RNASeq, SingleCell, Software

Documentation

Download

Dependencies

Depends: SingleCellExperiment

Imports: stats, utils, methods, igraph, Matrix, BiocGenerics, BiocParallel, IRanges, S4Vectors, DelayedArray, DelayedMatrixStats, SummarizedExperiment, BiocNeighbors, BiocSingular, ScaledMatrix, beachmat, scuttle, metapod, scran, batchelor, uwot

Suggests: testthat, knitr, BiocStyle, rmarkdown, scater, bluster, DropletUtils, scRNAseq

Reverse dependencies

Suggests Me (1): Ibex