mumosa
Multi-Modal Single-Cell Analysis Methods
Bioconductor version: 3.23 · Package version: 1.20.0
Assorted utilities for multi-modal analyses of single-cell datasets. Includes functions to combine multiple modalities for downstream analysis, perform MNN-based batch correction across multiple modalities, and to compute correlations between assay values for different modalities.
Installation
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("mumosa") Details
| Maintainer | Aaron Lun <infinite.monkeys.with.keyboards@gmail.com> |
| Author | Aaron Lun [aut, cre] |
| License | GPL-3 |
| URL | http://bioconductor.org/packages/mumosa |
| Bug Reports | https://support.bioconductor.org/ |
| Downloads rank | 294 |
| Source branch | RELEASE_3_23 |
| biocViews | ImmunoOncology, RNASeq, SingleCell, Software |
Documentation
Download
Dependencies
Depends: SingleCellExperiment
Imports: stats, utils, methods, igraph, Matrix, BiocGenerics, BiocParallel, IRanges, S4Vectors, DelayedArray, DelayedMatrixStats, SummarizedExperiment, BiocNeighbors, BiocSingular, ScaledMatrix, beachmat, scuttle, metapod, scran, batchelor, uwot
Suggests: testthat, knitr, BiocStyle, rmarkdown, scater, bluster, DropletUtils, scRNAseq
Reverse dependencies
Suggests Me (1): Ibex