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mtbls2

MetaboLights MTBLS2: Comparative LC/MS-based profiling of silver nitrate-treated Arabidopsis thaliana leaves of wild-type and cyp79B2 cyp79B3 double knockout plants. Böttcher et al. (2004)

Bioconductor version: 3.23 · Package version: 1.42.0

Indole-3-acetaldoxime (IAOx) represents an early intermediate of the biosynthesis of a variety of indolic secondary metabolites including the phytoanticipin indol-3-ylmethyl glucosinolate and the phytoalexin camalexin (3-thiazol-2'-yl-indole). Arabidopsis thaliana cyp79B2 cyp79B3 double knockout plants are completely impaired in the conversion of tryptophan to indole-3-acetaldoxime and do not accumulate IAOx-derived metabolites any longer. Consequently, comparative analysis of wild-type and cyp79B2 cyp79B3 plant lines has the potential to explore the complete range of IAOx-derived indolic secondary metabolites.

Installation

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("mtbls2")

Details

MaintainerSteffen Neumann <sneumann@ipb-halle.de>
AuthorSteffen Neumann <sneumann@ipb-halle.de>
LicenseCC0
URLhttp://www.ebi.ac.uk/metabolights/MTBLS2, https://github.com/sneumann/mtbls2
Downloads rank180
Source branchRELEASE_3_23
biocViewsExperimentData, MassSpectrometryData, RepositoryData

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Dependencies

Depends: R (>= 2.10)

Suggests: MSnbase, xcms (>= 3.13.8), CAMERA, knitr, Heatplus, pcaMethods, sp, rmarkdown, Biobase

Reverse dependencies

Suggests Me (2): IPO, yamss