mspms
Tools for the analysis of MSP-MS data
Bioconductor version: 3.23 · Package version: 1.4.0
This package provides functions for the analysis of data generated by the multiplex substrate profiling by mass spectrometry for proteases (MSP-MS) method. Data exported from upstream proteomics software is accepted as input and subsequently processed for analysis. Tools for statistical analysis, visualization, and interpretation of the data are provided.
Installation
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("mspms") Details
| Maintainer | Charlie Bayne <baynec2@gmail.com> |
| Author | Charlie Bayne [aut, cre] (ORCID: <https://orcid.org/0000-0003-1870-5298>) |
| License | MIT + file LICENSE |
| URL | https://github.com/baynec2/mspms |
| Bug Reports | https://github.com/baynec2/mspms/issues |
| Downloads rank | 206 |
| Source branch | RELEASE_3_23 |
| biocViews | MassSpectrometry, Preprocessing, Proteomics, Software |
Documentation
Download
Dependencies
Depends: R (>= 4.4.0)
Imports: QFeatures, limma, SummarizedExperiment, magrittr, rlang, dplyr, purrr, stats, tidyr, stringr, ggplot2, ggseqlogo, heatmaply, readr, rstatix, tibble, ggpubr, imputeLCMD
Suggests: knitr, testthat (>= 3.0.0), downloadthis, DT, rmarkdown, BiocStyle