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mspms

Tools for the analysis of MSP-MS data

Bioconductor version: 3.23 · Package version: 1.4.0

This package provides functions for the analysis of data generated by the multiplex substrate profiling by mass spectrometry for proteases (MSP-MS) method. Data exported from upstream proteomics software is accepted as input and subsequently processed for analysis. Tools for statistical analysis, visualization, and interpretation of the data are provided.

Installation

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("mspms")

Details

MaintainerCharlie Bayne <baynec2@gmail.com>
AuthorCharlie Bayne [aut, cre] (ORCID: <https://orcid.org/0000-0003-1870-5298>)
LicenseMIT + file LICENSE
URLhttps://github.com/baynec2/mspms
Bug Reportshttps://github.com/baynec2/mspms/issues
Downloads rank206
Source branchRELEASE_3_23
biocViewsMassSpectrometry, Preprocessing, Proteomics, Software

Documentation

Download

Dependencies

Depends: R (>= 4.4.0)

Imports: QFeatures, limma, SummarizedExperiment, magrittr, rlang, dplyr, purrr, stats, tidyr, stringr, ggplot2, ggseqlogo, heatmaply, readr, rstatix, tibble, ggpubr, imputeLCMD

Suggests: knitr, testthat (>= 3.0.0), downloadthis, DT, rmarkdown, BiocStyle