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msdata

Various Mass Spectrometry raw data example files

Bioconductor version: 3.23 · Package version: 0.52.0

Ion Trap positive ionization mode data in mzML file format. Subset from 500-850 m/z and 1190-1310 seconds, incl. MS2 and MS3, intensity threshold 100.000. Extracts from FTICR Apex III, m/z 400-450. Subset of UPLC - Bruker micrOTOFq data, both mzML and mz5. LC-MSMS and MRM files from proteomics experiments. PSI mzIdentML example files for various search engines.

Installation

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("msdata")

Details

MaintainerSteffen Neumann <sneumann@ipb-halle.de>, Laurent Gatto <laurent.gatto@uclouvain.be>
AuthorSteffen Neumann <sneumann@ipb-halle.de>, Laurent Gatto <laurent.gatto@uclouvain.be> with contriutions from Johannes Rainer
LicenseGPL (>= 2)
Downloads rank994
Source branchRELEASE_3_23
biocViewsExperimentData, MassSpectrometryData

Download

Dependencies

Depends: R (>= 3.5.0)

Suggests: xcms, mzR, MSnbase

Reverse dependencies

Suggests Me (7): Chromatograms, IPO, MSnbase, peakPantheR, QFeatures, RforProteomics, TargetDecoy