mitology
Study of mitochondrial activity from RNA-seq data
Bioconductor version: 3.23 · Package version: 1.4.0
mitology allows to study the mitochondrial activity throught high-throughput RNA-seq data. It is based on a collection of genes whose proteins localize in to the mitochondria. From these, mitology provides a reorganization of the pathways related to mitochondria activity from Reactome and Gene Ontology. Further a ready-to-use implementation of MitoCarta3.0 pathways is included.
Installation
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("mitology") Details
| Maintainer | Stefania Pirrotta <stefania.pirrotta@unipd.it> |
| Author | Stefania Pirrotta [cre, aut] (ORCID: <https://orcid.org/0009-0004-0030-217X>), Enrica Calura [aut, fnd] (ORCID: <https://orcid.org/0000-0001-8463-2432>) |
| License | AGPL-3 |
| URL | https://github.com/CaluraLab/mitology |
| Bug Reports | https://github.com/CaluraLab/mitology/issues |
| Downloads rank | 179 |
| Source branch | RELEASE_3_23 |
| biocViews | GO, GeneExpression, Pathways, RNASeq, Reactome, SingleCell, Software, Spatial, Visualization |
Documentation
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Dependencies
Depends: R (>= 4.5.0)
Imports: AnnotationDbi, ape, circlize, clusterProfiler, ComplexHeatmap, ggplot2, ggtree, magrittr, org.Hs.eg.db, ReactomePA, scales
Suggests: Biobase, BiocStyle, GSVA, methods, rmarkdown, knitr, SummarizedExperiment, testthat