microbiomeDataSets
Experiment Hub based microbiome datasets
Bioconductor version: 3.23 · Package version: 1.20.0
microbiomeDataSets is a collection of microbiome datasets loaded from Bioconductor'S ExperimentHub infrastructure. The datasets serve as reference for workflows and vignettes published adjacent to the microbiome analysis tools on Bioconductor. Additional datasets can be added overtime and additions from authors are welcome.
Installation
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("microbiomeDataSets") Details
| Maintainer | Leo Lahti <leo.lahti@iki.fi> |
| Author | Leo Lahti [cre, aut] (ORCID: <https://orcid.org/0000-0001-5537-637X>), Felix G.M. Ernst [aut] (ORCID: <https://orcid.org/0000-0001-5064-0928>), Sudarshan Shetty [aut] (ORCID: <https://orcid.org/0000-0001-7280-9915>), Chouaib Benchraka [ctb] (ORCID: <https://orcid.org/0000-0002-1167-7848>), Yagmur Simsek [ctb] |
| License | CC0 |
| Downloads rank | 290 |
| Source branch | RELEASE_3_23 |
| biocViews | ExperimentData, ExperimentHub, MicrobiomeData, SequencingData |
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Dependencies
Depends: R (>= 4.1), SummarizedExperiment, TreeSummarizedExperiment, MultiAssayExperiment
Imports: methods, utils, BiocGenerics, ExperimentHub, Biostrings, ape
Suggests: knitr, rmarkdown, BiocStyle, SingleCellExperiment, testthat
Reverse dependencies
Suggests Me (1): mia