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microbiomeDASim

Microbiome Differential Abundance Simulation

Bioconductor version: 3.23 · Package version: 1.26.0

A toolkit for simulating differential microbiome data designed for longitudinal analyses. Several functional forms may be specified for the mean trend. Observations are drawn from a multivariate normal model. The objective of this package is to be able to simulate data in order to accurately compare different longitudinal methods for differential abundance.

Installation

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("microbiomeDASim")

Details

MaintainerJustin Williams <williazo@ucla.edu>
AuthorJustin Williams, Hector Corrada Bravo, Jennifer Tom, Joseph Nathaniel Paulson
LicenseMIT + file LICENSE
URLhttps://github.com/williazo/microbiomeDASim
Bug Reportshttps://github.com/williazo/microbiomeDASim/issues
Downloads rank222
Source branchRELEASE_3_23
biocViewsMicrobiome, Software, Visualization

Documentation

Download

Dependencies

Depends: R (>= 3.6.0)

Imports: graphics, ggplot2, MASS, tmvtnorm, Matrix, mvtnorm, pbapply, stats, phyloseq, metagenomeSeq, Biobase

Suggests: testthat (>= 2.1.0), knitr, devtools