microbiome

Microbiome Analytics

Bioconductor version: 3.23 · Package version: 1.34.0

Utilities for microbiome analysis.

Installation

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("microbiome")

Maintainer	Leo Lahti <leo.lahti@iki.fi>
Author	Leo Lahti [aut, cre] (ORCID: <https://orcid.org/0000-0001-5537-637X>), Sudarshan Shetty [aut] (ORCID: <https://orcid.org/0000-0001-7280-9915>)
License	BSD_2_clause + file LICENSE
URL	http://microbiome.github.io/microbiome
Bug Reports	https://github.com/microbiome/microbiome/issues
Downloads rank	2631
Source branch	RELEASE_3_23
biocViews	Metagenomics, Microbiome, Sequencing, Software, SystemsBiology

Dependencies

Depends: R (>= 3.6.0), phyloseq, ggplot2

Imports: Biostrings, compositions, dplyr, reshape2, Rtsne, scales, stats, tibble, tidyr, utils, vegan

Suggests: BiocGenerics, BiocStyle, Cairo, knitr, rmarkdown, testthat

Reverse dependencies

Depends On Me (1): TaxaNorm

Imports Me (3): benchdamic, DspikeIn, MicrobiomeSurv

Suggests Me (5): ANCOMBC, CrcBiomeScreen, dar, MeLSI, zitools