miaTime
Microbiome Time Series Analysis
Bioconductor version: 3.23 · Package version: 1.2.0
The `miaTime` package provides tools for microbiome time series analysis based on (Tree)SummarizedExperiment infrastructure.
Installation
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("miaTime")Details
| Maintainer | Tuomas Borman <tuomas.v.borman@utu.fi> |
| Author | Leo Lahti [aut] (ORCID: <https://orcid.org/0000-0001-5537-637X>), Tuomas Borman [aut, cre] (ORCID: <https://orcid.org/0000-0002-8563-8884>), Yagmur Simsek [aut], Sudarshan Shetty [ctb], Chouaib Benchraka [ctb], Muluh Muluh [ctb], Ali Hajj [ctb] |
| License | Artistic-2.0 | file LICENSE |
| URL | https://github.com/microbiome/miaTime |
| Bug Reports | https://github.com/microbiome/miaTime/issues |
| Downloads rank | 166 |
| Source branch | RELEASE_3_23 |
| biocViews | Microbiome, Sequencing, Software |
Documentation
Download
Dependencies
Depends: R (>= 4.5.0), mia
Imports: dplyr, methods, S4Vectors, SingleCellExperiment, stats, SummarizedExperiment, tidyr, TreeSummarizedExperiment
Suggests: BiocStyle, devtools, ggplot2, knitr, lubridate, miaViz, rmarkdown, scater, testthat, vegan