miRSM
Inferring miRNA sponge modules in heterogeneous data
Bioconductor version: 3.23 · Package version: 2.8.0
The package aims to identify miRNA sponge or ceRNA modules in heterogeneous data. It provides several functions to study miRNA sponge modules at single-sample and multi-sample levels, including popular methods for inferring gene modules (candidate miRNA sponge or ceRNA modules), and two functions to identify miRNA sponge modules at single-sample and multi-sample levels, as well as several functions to conduct modular analysis of miRNA sponge modules.
Installation
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("miRSM") Details
| Maintainer | Junpeng Zhang <zjp@dali.edu.cn> |
| Author | Junpeng Zhang [aut, cre] |
| License | GPL-3 |
| URL | https://github.com/zhangjunpeng411/miRSM |
| Bug Reports | https://github.com/zhangjunpeng411/miRSM/issues |
| Downloads rank | 338 |
| Source branch | RELEASE_3_23 |
| biocViews | BiomedicalInformatics, Clustering, GeneExpression, GeneRegulation, GeneSetEnrichment, GeneTarget, Microarray, Software |
Documentation
Download
Dependencies
Depends: R (>= 4.4.0)
Imports: WGCNA, flashClust, dynamicTreeCut, GFA, igraph, RColorBrewer, grid, MCL, fabia, NMF, BicARE, isa2, methods, rJava, Biobase, PMA, stats, dbscan, mclust, SOMbrero, ppclust, Rcpp, utils, SummarizedExperiment, GSEABase, org.Hs.eg.db, clusterProfiler, ReactomePA, DOSE, MatrixCorrelation, energy