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metapod

Meta-Analyses on P-Values of Differential Analyses

Bioconductor version: 3.23 · Package version: 1.20.0

Implements a variety of methods for combining p-values in differential analyses of genome-scale datasets. Functions can combine p-values across different tests in the same analysis (e.g., genomic windows in ChIP-seq, exons in RNA-seq) or for corresponding tests across separate analyses (e.g., replicated comparisons, effect of different treatment conditions). Support is provided for handling log-transformed input p-values, missing values and weighting where appropriate.

Installation

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("metapod")

Details

MaintainerAaron Lun <infinite.monkeys.with.keyboards@gmail.com>
AuthorAaron Lun [aut, cre]
LicenseGPL-3
URLhttps://github.com/LTLA/metapod
Bug Reportshttps://github.com/LTLA/metapod/issues
System RequirementsC++11
Downloads rank7510
Source branchRELEASE_3_23
biocViewsDifferentialPeakCalling, MultipleComparison, Software

Documentation

Download

Dependencies

Imports: Rcpp

LinkingTo: Rcpp

Suggests: testthat, knitr, BiocStyle, rmarkdown

Reverse dependencies

Imports Me (5): csaw, DGEAR, mumosa, scp, scran

Suggests Me (1): TSCAN