metabom8
A High-Performance R Package for Metabolomics Modeling and Analysis
Bioconductor version: 3.23 · Package version: 1.0.8
Tools for 1D NMR metabolomics workflows, including import and preprocessing of Bruker experiments, multivariate modeling (PCA, PLS, OPLS) and model analytics and validation (y-permutations, cv-anova). Performance-critical routines are implemented in C++ and use the Armadillo and Eigen linear algebra libraries to improve runtime.
Installation
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("metabom8") Details
| Maintainer | Torben Kimhofer <tkimhofer@gmail.com> |
| Author | Torben Kimhofer [aut, cre] (ORCID: <https://orcid.org/0000-0001-7158-9930>) |
| License | MIT + file LICENSE |
| URL | https://tkimhofer.github.io/metabom8/ |
| Bug Reports | https://github.com/tkimhofer/metabom8/issues |
| Downloads rank | 49 |
| Source branch | RELEASE_3_23 |
| biocViews | Alignment, Cheminformatics, DataImport, Metabolomics, Preprocessing, Software, WorkflowStep |
Documentation
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Dependencies
Depends: R (>= 4.5.0)
Imports: abind, colorRamps, ellipse, fs, ggplot2, ggrepel, graphics, methods, parallel, pcaMethods, plotly, pROC, progress, ptw, Rcpp (>= 1.0.4.6), reshape2, rlang, scales, signal, stats, utils
LinkingTo: Rcpp, RcppArmadillo, RcppEigen
Suggests: BiocStyle, dplyr, DT, ExperimentHub, htmlTable, knitr, rmarkdown, testthat