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metabom8

A High-Performance R Package for Metabolomics Modeling and Analysis

Bioconductor version: 3.23 · Package version: 1.0.8

Tools for 1D NMR metabolomics workflows, including import and preprocessing of Bruker experiments, multivariate modeling (PCA, PLS, OPLS) and model analytics and validation (y-permutations, cv-anova). Performance-critical routines are implemented in C++ and use the Armadillo and Eigen linear algebra libraries to improve runtime.

Installation

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("metabom8")

Details

MaintainerTorben Kimhofer <tkimhofer@gmail.com>
AuthorTorben Kimhofer [aut, cre] (ORCID: <https://orcid.org/0000-0001-7158-9930>)
LicenseMIT + file LICENSE
URLhttps://tkimhofer.github.io/metabom8/
Bug Reportshttps://github.com/tkimhofer/metabom8/issues
Downloads rank49
Source branchRELEASE_3_23
biocViewsAlignment, Cheminformatics, DataImport, Metabolomics, Preprocessing, Software, WorkflowStep

Documentation

Download

Dependencies

Depends: R (>= 4.5.0)

Imports: abind, colorRamps, ellipse, fs, ggplot2, ggrepel, graphics, methods, parallel, pcaMethods, plotly, pROC, progress, ptw, Rcpp (>= 1.0.4.6), reshape2, rlang, scales, signal, stats, utils

LinkingTo: Rcpp, RcppArmadillo, RcppEigen

Suggests: BiocStyle, dplyr, DT, ExperimentHub, htmlTable, knitr, rmarkdown, testthat