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metabolomicsWorkbenchR

Metabolomics Workbench in R

Bioconductor version: 3.23 · Package version: 1.22.0

This package provides functions for interfacing with the Metabolomics Workbench RESTful API. Study, compound, protein and gene information can be searched for using the API. Methods to obtain study data in common Bioconductor formats such as SummarizedExperiment and MultiAssayExperiment are also included.

Installation

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("metabolomicsWorkbenchR")

Details

MaintainerGavin Rhys Lloyd <g.r.lloyd@bham.ac.uk>
AuthorGavin Rhys Lloyd [aut, cre], Ralf Johannes Maria Weber [aut]
LicenseGPL-3
Downloads rank313
Source branchRELEASE_3_23
biocViewsMetabolomics, Software

Documentation

Download

Dependencies

Depends: R (>= 4.0)

Imports: data.table, httr, jsonlite, methods, MultiAssayExperiment, struct, SummarizedExperiment, utils

Suggests: BiocStyle, covr, knitr, HDF5Array, httptest, rmarkdown, structToolbox, testthat, pmp, grid, png

Reverse dependencies

Suggests Me (2): fobitools, MetMashR