metabolomicsWorkbenchR
Metabolomics Workbench in R
Bioconductor version: 3.23 · Package version: 1.22.0
This package provides functions for interfacing with the Metabolomics Workbench RESTful API. Study, compound, protein and gene information can be searched for using the API. Methods to obtain study data in common Bioconductor formats such as SummarizedExperiment and MultiAssayExperiment are also included.
Installation
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("metabolomicsWorkbenchR") Details
| Maintainer | Gavin Rhys Lloyd <g.r.lloyd@bham.ac.uk> |
| Author | Gavin Rhys Lloyd [aut, cre], Ralf Johannes Maria Weber [aut] |
| License | GPL-3 |
| Downloads rank | 313 |
| Source branch | RELEASE_3_23 |
| biocViews | Metabolomics, Software |
Documentation
Download
Dependencies
Depends: R (>= 4.0)
Imports: data.table, httr, jsonlite, methods, MultiAssayExperiment, struct, SummarizedExperiment, utils
Suggests: BiocStyle, covr, knitr, HDF5Array, httptest, rmarkdown, structToolbox, testthat, pmp, grid, png