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metaboliteIDmapping

Mapping of Metabolite IDs from Different Sources

Bioconductor version: 3.23 · Package version: 1.0.0

The package provides a comprehensive mapping table of nine different Metabolite ID formats and their common name. The data has been collected and merged from four publicly available source, including HMDB, Comptox Dashboard, ChEBI, and the graphite Bioconductor R package.

Installation

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("metaboliteIDmapping")

Details

MaintainerSebastian Canzler <sebastian.canzler@ufz.de>
AuthorSebastian Canzler [aut, cre] (<https://orcid.org/0000-0001-7935-9582>)
LicenseGPL-3
URLhttps://github.com/yigbt/metaboliteIDmapping
Downloads rank165
Source branchRELEASE_3_23
biocViewsAnnotationData, AnnotationHub, CustomDBSchema, FunctionalAnnotation

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Dependencies

Depends: R (>= 4.0.0)

Imports: AnnotationHub

Suggests: magrittr, graphite, dplyr, tidyr, tibble, rappdirs, XML, readxl, stringr, utils, knitr, sets, R.utils, readr, conflicted, rmarkdown

Reverse dependencies

Imports Me (1): multiGSEA