magpie
MeRIP-Seq data Analysis for Genomic Power Investigation and Evaluation
Bioconductor version: 3.23 · Package version: 1.12.0
This package aims to perform power analysis for the MeRIP-seq study. It calculates FDR, FDC, power, and precision under various study design parameters, including but not limited to sample size, sequencing depth, and testing method. It can also output results into .xlsx files or produce corresponding figures of choice.
Installation
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("magpie") Details
| Maintainer | Daoyu Duan <dxd429@case.edu> |
| Author | Daoyu Duan [aut, cre], Zhenxing Guo [aut] |
| License | MIT + file LICENSE |
| URL | https://github.com/dxd429/magpie |
| Bug Reports | https://github.com/dxd429/magpie/issues |
| Downloads rank | 247 |
| Source branch | RELEASE_3_23 |
| biocViews | DifferentialMethylation, Epitranscriptomics, RNASeq, Sequencing, Software |
Documentation
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Dependencies
Depends: R (>= 4.3.0)
Imports: utils, rtracklayer, Matrix, matrixStats, stats, S4Vectors, methods, graphics, GenomicRanges, GenomicFeatures, IRanges, Rsamtools, AnnotationDbi, aod, BiocParallel, DESeq2, openxlsx, RColorBrewer, reshape2, TRESS
Suggests: knitr, rmarkdown, kableExtra, RUnit, TBX20BamSubset, BiocGenerics, BiocStyle