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m6Aboost

m6Aboost

Bioconductor version: 3.23 · Package version: 1.18.0

This package can help user to run the m6Aboost model on their own miCLIP2 data. The package includes functions to assign the read counts and get the features to run the m6Aboost model. The miCLIP2 data should be stored in a GRanges object. More details can be found in the vignette.

Installation

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("m6Aboost")

Details

MaintainerYou Zhou <youzhoulearning@gmail.com>
AuthorYou Zhou [aut, cre] (ORCID: <https://orcid.org/0000-0003-1755-9073>), Kathi Zarnack [aut] (ORCID: <https://orcid.org/0000-0003-3527-3378>)
LicenseArtistic-2.0
URLhttps://github.com/ZarnackGroup/m6Aboost
Bug Reportshttps://github.com/ZarnackGroup/m6Aboost/issues
Downloads rank242
Source branchRELEASE_3_23
biocViewsEpigenetics, ExperimentHubSoftware, Genetics, Sequencing, Software

Documentation

Download

Dependencies

Depends: S4Vectors, adabag, GenomicRanges, R (>= 4.1)

Imports: dplyr, rtracklayer, BSgenome, Biostrings, utils, methods, IRanges, ExperimentHub

Suggests: knitr, rmarkdown, bookdown, testthat, BiocStyle, BSgenome.Mmusculus.UCSC.mm10