m6Aboost
m6Aboost
Bioconductor version: 3.23 · Package version: 1.18.0
This package can help user to run the m6Aboost model on their own miCLIP2 data. The package includes functions to assign the read counts and get the features to run the m6Aboost model. The miCLIP2 data should be stored in a GRanges object. More details can be found in the vignette.
Installation
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("m6Aboost") Details
| Maintainer | You Zhou <youzhoulearning@gmail.com> |
| Author | You Zhou [aut, cre] (ORCID: <https://orcid.org/0000-0003-1755-9073>), Kathi Zarnack [aut] (ORCID: <https://orcid.org/0000-0003-3527-3378>) |
| License | Artistic-2.0 |
| URL | https://github.com/ZarnackGroup/m6Aboost |
| Bug Reports | https://github.com/ZarnackGroup/m6Aboost/issues |
| Downloads rank | 242 |
| Source branch | RELEASE_3_23 |
| biocViews | Epigenetics, ExperimentHubSoftware, Genetics, Sequencing, Software |
Documentation
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Dependencies
Depends: S4Vectors, adabag, GenomicRanges, R (>= 4.1)
Imports: dplyr, rtracklayer, BSgenome, Biostrings, utils, methods, IRanges, ExperimentHub
Suggests: knitr, rmarkdown, bookdown, testthat, BiocStyle, BSgenome.Mmusculus.UCSC.mm10