lineagespot

Detection of SARS-CoV-2 lineages in wastewater samples using next-generation sequencing

Bioconductor version: 3.23 · Package version: 1.16.0

Lineagespot is a framework written in R, and aims to identify SARS-CoV-2 related mutations based on a single (or a list) of variant(s) file(s) (i.e., variant calling format). The method can facilitate the detection of SARS-CoV-2 lineages in wastewater samples using next generation sequencing, and attempts to infer the potential distribution of the SARS-CoV-2 lineages.

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("lineagespot")