lcmsPlot

Comprehensive Liquid Chromatography-Mass Spectrometry (LC-MS) data visualisation package

Bioconductor version: 3.23 · Package version: 1.0.0

lcmsPlot is an R package designed for visualising Liquid Chromatography-Mass Spectrometry (LC-MS) data with publication-ready high-quality plots. The package enables users to generate and customise chromatograms, mass traces, spectra, and more with fine-tuned aesthetics and annotation options.

Installation

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("lcmsPlot")

Details

Maintainer	Ossama Edbali <o.edbali@bham.ac.uk>
Author	Ossama Edbali [aut, cre] (ORCID: <https://orcid.org/0000-0003-0132-8668>), Ralf Johannes Maria Weber [aut] (ORCID: <https://orcid.org/0000-0002-8796-4771>)
License	GPL-3
URL	https://github.com/computational-metabolomics/lcmsPlot
Bug Reports	https://github.com/computational-metabolomics/lcmsPlot/issues
Downloads rank	60
Source branch	RELEASE_3_23
biocViews	MassSpectrometry, Metabolomics, Software

Documentation

Download

Source package

Dependencies

Depends: R (>= 4.4.0)

Imports: methods, rlang, dplyr, tibble, tidyr, BiocParallel, MSnbase, xcms, MsExperiment, mzR, Spectra, MsBackendMsp, S4Vectors, ggplot2, scales, patchwork, DBI, RSQLite

Suggests: knitr, rmarkdown, BiocStyle, openxlsx, faahKO, rawrr, testthat (>= 3.0.0)