isomiRs
Analyze isomiRs and miRNAs from small RNA-seq
Bioconductor version: 3.23 · Package version: 1.40.0
Characterization of miRNAs and isomiRs, clustering and differential expression.
Installation
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("isomiRs")Details
| Maintainer | Lorena Pantano <lorena.pantano@gmail.com> |
| Author | Lorena Pantano [aut, cre], Georgia Escaramis [aut] (CIBERESP - CIBER Epidemiologia y Salud Publica) |
| License | MIT + file LICENSE |
| Bug Reports | https://github.com/lpantano/isomiRs/issues |
| Downloads rank | 393 |
| Source branch | RELEASE_3_23 |
| biocViews | Clustering, DifferentialExpression, ImmunoOncology, RNASeq, Software, miRNA |
Documentation
Download
Dependencies
Depends: R (>= 4.4), SummarizedExperiment
Imports: AnnotationDbi, BiocGenerics, Biobase, broom, cluster, cowplot, DEGreport, DESeq2, IRanges, dplyr, GenomicRanges, gplots, ggplot2, gtools, gridExtra, grid, grDevices, graphics, GGally, limma, methods, RColorBrewer, readr, reshape, rlang, stats, stringr, S4Vectors, tidyr, tibble
Suggests: knitr, rmarkdown, org.Mm.eg.db, pheatmap, BiocStyle, testthat