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immunogenViewer

Visualization and evaluation of protein immunogens

Bioconductor version: 3.23 · Package version: 1.6.0

Plots protein properties and visualizes position of peptide immunogens within protein sequence. Allows evaluation of immunogens based on structural and functional annotations to infer suitability for antibody-based methods aiming to detect native proteins.

Installation

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("immunogenViewer")

Details

MaintainerKatharina Waury <kathiwaury@gmail.com>
AuthorKatharina Waury [aut, cre] (ORCID: <https://orcid.org/0000-0002-8570-7640>)
LicenseApache License (>= 2)
URLhttps://github.com/kathiwaury/immunogenViewer
Bug Reportshttps://github.com/kathiwaury/immunogenViewer/issues
Downloads rank138
Source branchRELEASE_3_23
biocViewsFeatureExtraction, Proteomics, Software, Visualization

Documentation

Download

Dependencies

Depends: R (>= 4.0)

Imports: ggplot2, httr, jsonlite, patchwork, UniProt.ws

Suggests: BiocStyle, knitr, rmarkdown, testthat (>= 3.0.0), DT