immunogenViewer
Visualization and evaluation of protein immunogens
Bioconductor version: 3.23 · Package version: 1.6.0
Plots protein properties and visualizes position of peptide immunogens within protein sequence. Allows evaluation of immunogens based on structural and functional annotations to infer suitability for antibody-based methods aiming to detect native proteins.
Installation
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("immunogenViewer") Details
| Maintainer | Katharina Waury <kathiwaury@gmail.com> |
| Author | Katharina Waury [aut, cre] (ORCID: <https://orcid.org/0000-0002-8570-7640>) |
| License | Apache License (>= 2) |
| URL | https://github.com/kathiwaury/immunogenViewer |
| Bug Reports | https://github.com/kathiwaury/immunogenViewer/issues |
| Downloads rank | 138 |
| Source branch | RELEASE_3_23 |
| biocViews | FeatureExtraction, Proteomics, Software, Visualization |
Documentation
Download
Dependencies
Depends: R (>= 4.0)
Imports: ggplot2, httr, jsonlite, patchwork, UniProt.ws
Suggests: BiocStyle, knitr, rmarkdown, testthat (>= 3.0.0), DT