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igvShiny

igvShiny: a wrapper of Integrative Genomics Viewer (IGV - an interactive tool for visualization and exploration integrated genomic data)

Bioconductor version: 3.23 · Package version: 1.8.3

This package is a wrapper of Integrative Genomics Viewer (IGV). It comprises an htmlwidget version of IGV. It can be used as a module in Shiny apps.

Installation

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("igvShiny")

Details

MaintainerArkadiusz Gladki <gladki.arkadiusz@gmail.com>
AuthorPaul Shannon [aut], Arkadiusz Gladki [aut, cre] (ORCID: <https://orcid.org/0000-0002-7059-6378>), Karolina Scigocka [aut]
LicenseMIT + file LICENSE
URLhttps://github.com/gladkia/igvShiny, https://gladkia.github.io/igvShiny/
Bug Reportshttps://github.com/gladkia/igvShiny/issues
Downloads rank260
Source branchRELEASE_3_23
biocViewsCoverage, Sequencing, ShinyApps, Software

Documentation

Download

Dependencies

Depends: R (>= 3.5.0), GenomicRanges, methods, shiny

Imports: BiocGenerics, checkmate, futile.logger, GenomeInfoDbData, htmlwidgets, httr, jsonlite, randomcoloR, utils

Suggests: BiocStyle, GenomicAlignments, knitr, Rsamtools, rtracklayer, testthat, shinytest2, VariantAnnotation

Reverse dependencies

Imports Me (1): damidBind