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idpr

Profiling and Analyzing Intrinsically Disordered Proteins in R

Bioconductor version: 3.23 · Package version: 1.22.0

‘idpr’ aims to integrate tools for the computational analysis of intrinsically disordered proteins (IDPs) within R. This package is used to identify known characteristics of IDPs for a sequence of interest with easily reported and dynamic results. Additionally, this package includes tools for IDP-based sequence analysis to be used in conjunction with other R packages. Described in McFadden WM & Yanowitz JL (2022). "idpr: A package for profiling and analyzing Intrinsically Disordered Proteins in R." PloS one, 17(4), e0266929. <https://doi.org/10.1371/journal.pone.0266929>.

Installation

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("idpr")

Details

MaintainerWilliam M. McFadden <wmm27@pitt.edu>
AuthorWilliam M. McFadden [cre, aut], Judith L. Yanowitz [aut, fnd], Michael Buszczak [ctb, fnd]
LicenseLGPL (>= 3)
Bug Reportshttps://github.com/wmm27/idpr/issues
Downloads rank281
Source branchRELEASE_3_23
biocViewsCellBiology, Proteomics, Software, StructuralPrediction

Documentation

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Dependencies

Depends: R (>= 4.1.0)

Imports: ggplot2 (>= 3.3.0), magrittr (>= 1.5), dplyr (>= 0.8.5), plyr (>= 1.8.6), jsonlite (>= 1.6.1), rlang (>= 0.4.6), Biostrings (>= 2.56.0), methods (>= 4.0.0)

Suggests: knitr, rmarkdown, pwalign, msa, ape, testthat, seqinr