idpr
Profiling and Analyzing Intrinsically Disordered Proteins in R
Bioconductor version: 3.23 · Package version: 1.22.0
‘idpr’ aims to integrate tools for the computational analysis of intrinsically disordered proteins (IDPs) within R. This package is used to identify known characteristics of IDPs for a sequence of interest with easily reported and dynamic results. Additionally, this package includes tools for IDP-based sequence analysis to be used in conjunction with other R packages. Described in McFadden WM & Yanowitz JL (2022). "idpr: A package for profiling and analyzing Intrinsically Disordered Proteins in R." PloS one, 17(4), e0266929. <https://doi.org/10.1371/journal.pone.0266929>.
Installation
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("idpr") Details
| Maintainer | William M. McFadden <wmm27@pitt.edu> |
| Author | William M. McFadden [cre, aut], Judith L. Yanowitz [aut, fnd], Michael Buszczak [ctb, fnd] |
| License | LGPL (>= 3) |
| Bug Reports | https://github.com/wmm27/idpr/issues |
| Downloads rank | 281 |
| Source branch | RELEASE_3_23 |
| biocViews | CellBiology, Proteomics, Software, StructuralPrediction |
Documentation
- Charge and Hydropathy Vignette
- Disordered Matrices Vignette
- idpr Package Overview Vignette
- IUPred Vignette
- Sequence Map Vignette
- Structural Tendency Vignette
Download
Dependencies
Depends: R (>= 4.1.0)
Imports: ggplot2 (>= 3.3.0), magrittr (>= 1.5), dplyr (>= 0.8.5), plyr (>= 1.8.6), jsonlite (>= 1.6.1), rlang (>= 0.4.6), Biostrings (>= 2.56.0), methods (>= 4.0.0)
Suggests: knitr, rmarkdown, pwalign, msa, ape, testthat, seqinr