iSEEu

iSEE Universe

Bioconductor version: 3.23 · Package version: 1.24.0

iSEEu (the iSEE universe) contains diverse functionality to extend the usage of the iSEE package, including additional classes for the panels, or modes allowing easy configuration of iSEE applications.

Installation

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("iSEEu")

Details

Maintainer	Kevin Rue-Albrecht <kevinrue67@gmail.com>
Author	Kevin Rue-Albrecht [aut, cre] (ORCID: <https://orcid.org/0000-0003-3899-3872>), Charlotte Soneson [aut] (ORCID: <https://orcid.org/0000-0003-3833-2169>), Federico Marini [aut] (ORCID: <https://orcid.org/0000-0003-3252-7758>), Aaron Lun [aut] (ORCID: <https://orcid.org/0000-0002-3564-4813>), Michael Stadler [ctb]
License	MIT + file LICENSE
URL	https://github.com/iSEE/iSEEu
Bug Reports	https://github.com/iSEE/iSEEu/issues
Downloads rank	360
Source branch	RELEASE_3_23
biocViews	CellBasedAssays, Clustering, DimensionReduction, FeatureExtraction, GUI, GeneExpression, ImmunoOncology, SingleCell, Software, Transcription, Transcriptomics, Visualization

Documentation

Universe of iSEE panels

Download

Source package

Dependencies

Depends: iSEE, iSEEhex

Imports: methods, S4Vectors, IRanges, shiny, SummarizedExperiment, SingleCellExperiment, ggplot2 (>= 3.4.0), DT, stats, colourpicker, shinyAce

Suggests: scRNAseq, scater, scran, airway, edgeR, AnnotationDbi, org.Hs.eg.db, GO.db, KEGGREST, knitr, igraph, rmarkdown, BiocStyle, htmltools, Rtsne, uwot, testthat (>= 2.1.0), covr

Reverse dependencies

Imports Me (1): iSEEfier