iSEEtree

Interactive visualisation for microbiome data

Bioconductor version: 3.23 · Package version: 1.6.0

iSEEtree is an extension of iSEE for the TreeSummarizedExperiment data container. It provides interactive panel designs to explore hierarchical datasets, such as the microbiome and cell lines.

Installation

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("iSEEtree")

Details

Maintainer	Giulio Benedetti <giulio.benedetti@utu.fi>
Author	Giulio Benedetti [aut, cre] (ORCID: <https://orcid.org/0000-0002-8732-7692>), Ely Seraidarian [ctb] (ORCID: <https://orcid.org/0009-0008-8602-093X>), Leo Lahti [aut] (ORCID: <https://orcid.org/0000-0001-5537-637X>)
License	Artistic-2.0
URL	https://github.com/microbiome/iSEEtree
Bug Reports	https://github.com/microbiome/iSEEtree/issues
Downloads rank	185
Source branch	RELEASE_3_23
biocViews	DataImport, GUI, Microbiome, ShinyApps, Software, Visualization

Documentation

Download

Source package

Dependencies

Depends: R (>= 4.4.0), iSEE (>= 2.19.4)

Imports: ape, ggplot2, ggtree, grDevices, methods, miaViz, purrr, S4Vectors, shiny, mia, shinyWidgets, SingleCellExperiment, SummarizedExperiment, tidygraph, TreeSummarizedExperiment, utils

Suggests: biomformat, BiocStyle, knitr, RefManageR, remotes, rmarkdown, scater, testthat (>= 3.0.0), vegan

Reverse dependencies

Imports Me (1): miaDash