iSEEpathways
iSEE extension for panels related to pathway analysis
Bioconductor version: 3.23 · Package version: 1.10.0
This package contains diverse functionality to extend the usage of the iSEE package, including additional classes for the panels or modes facilitating the analysis of pathway analysis results. This package does not perform pathway analysis. Instead, it provides methods to embed precomputed pathway analysis results in a SummarizedExperiment object, in a manner that is compatible with interactive visualisation in iSEE applications.
Installation
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("iSEEpathways") Details
| Maintainer | Kevin Rue-Albrecht <kevinrue67@gmail.com> |
| Author | Kevin Rue-Albrecht [aut, cre] (ORCID: <https://orcid.org/0000-0003-3899-3872>), Thomas Sandmann [ctb] (ORCID: <https://orcid.org/0000-0002-6601-8890>), Charlotte Soneson [aut] (ORCID: <https://orcid.org/0000-0003-3833-2169>), Federico Marini [ctb] (ORCID: <https://orcid.org/0000-0003-3252-7758>), Denali Therapeutics [fnd] |
| License | Artistic-2.0 |
| URL | https://github.com/iSEE/iSEEpathways |
| Bug Reports | https://support.bioconductor.org/t/iSEEpathways |
| Downloads rank | 220 |
| Source branch | RELEASE_3_23 |
| biocViews | DifferentialExpression, GO, GUI, GeneExpression, GeneSetEnrichment, Infrastructure, Pathways, ShinyApps, Software, Visualization |
Documentation
Download
Dependencies
Depends: iSEE
Imports: ggplot2, methods, S4Vectors, shiny, shinyWidgets, stats, SummarizedExperiment
Suggests: airway, BiocStyle, covr, edgeR, fgsea, GO.db, iSEEde, knitr, org.Hs.eg.db, RefManageR, rmarkdown, scater, scuttle, sessioninfo, testthat (>= 3.0.0)