iSEEhub
iSEE for the Bioconductor ExperimentHub
Bioconductor version: 3.23 · Package version: 1.14.0
This package defines a custom landing page for an iSEE app interfacing with the Bioconductor ExperimentHub. The landing page allows users to browse the ExperimentHub, select a data set, download and cache it, and import it directly into a Bioconductor iSEE app.
Installation
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("iSEEhub") Details
| Maintainer | Kevin Rue-Albrecht <kevinrue67@gmail.com> |
| Author | Kevin Rue-Albrecht [aut, cre] (ORCID: <https://orcid.org/0000-0003-3899-3872>) |
| License | Artistic-2.0 |
| URL | https://github.com/iSEE/iSEEhub |
| Bug Reports | https://support.bioconductor.org/t/iSEEhub |
| Downloads rank | 250 |
| Source branch | RELEASE_3_23 |
| biocViews | DataImport, ImmunoOncology Infrastructure, ShinyApps, SingleCell, Software |
Documentation
Download
Dependencies
Depends: SummarizedExperiment, SingleCellExperiment, ExperimentHub
Imports: AnnotationHub, BiocManager, DT, iSEE, methods, rintrojs, S4Vectors, shiny, shinydashboard, shinyjs, utils
Suggests: BiocStyle, covr, knitr, RefManageR, rmarkdown, sessioninfo, testthat (>= 3.0.0), nullrangesData
Enhances: BioPlex, biscuiteerData, bodymapRat, CLLmethylation, CopyNeutralIMA, curatedAdipoArray, curatedAdipoChIP, curatedMetagenomicData, curatedTCGAData, DMRcatedata, DuoClustering2018, easierData, emtdata, epimutacionsData, FieldEffectCrc, GenomicDistributionsData, GSE103322, GSE13015, GSE62944, HDCytoData, HMP16SData, HumanAffyData, imcdatasets, mcsurvdata, MetaGxBreast, MetaGxOvarian, MetaGxPancreas, MethylSeqData, muscData, NxtIRFdata, ObMiTi, quantiseqr, restfulSEData, RLHub, sesameData, SimBenchData, SingleCellMultiModal, SingleMoleculeFootprintingData, spatialDmelxsim, STexampleData, TabulaMurisData, TabulaMurisSenisData, TENxVisiumData, tissueTreg, VectraPolarisData, xcoredata