iSEEfier
Streamlining the creation of initial states for starting an iSEE instance
Bioconductor version: 3.23 · Package version: 1.8.0
iSEEfier provides a set of functionality to quickly and intuitively create, inspect, and combine initial configuration objects. These can be conveniently passed in a straightforward manner to the function call to launch iSEE() with the specified configuration. This package currently works seamlessly with the sets of panels provided by the iSEE and iSEEu packages, but can be extended to accommodate the usage of any custom panel (e.g. from iSEEde, iSEEpathways, or any panel developed independently by the user).
Installation
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("iSEEfier") Details
| Maintainer | Najla Abassi <abassi.nejla96@gmail.com> |
| Author | Najla Abassi [aut, cre] (ORCID: <https://orcid.org/0000-0001-8357-0938>), Federico Marini [aut] (ORCID: <https://orcid.org/0000-0003-3252-7758>) |
| License | MIT + file LICENSE |
| URL | https://github.com/NajlaAbassi/iSEEfier |
| Bug Reports | https://github.com/NajlaAbassi/iSEEfier/issues |
| Downloads rank | 193 |
| Source branch | RELEASE_3_23 |
| biocViews | CellBasedAssays, Clustering, DimensionReduction, FeatureExtraction, GUI, GeneExpression, ImmunoOncology, ShinyApps, SingleCell, Software, Transcription, Transcriptomics, Visualization |
Documentation
Download
Dependencies
Depends: R (>= 4.1.0)
Imports: iSEE, iSEEu, methods, ggplot2, igraph, rlang, stats, SummarizedExperiment, SingleCellExperiment, visNetwork, BiocBaseUtils
Suggests: knitr, rmarkdown, scater, scRNAseq, org.Mm.eg.db, scuttle, BiocStyle, testthat (>= 3.0.0)