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iSEEfier

Streamlining the creation of initial states for starting an iSEE instance

Bioconductor version: 3.23 · Package version: 1.8.0

iSEEfier provides a set of functionality to quickly and intuitively create, inspect, and combine initial configuration objects. These can be conveniently passed in a straightforward manner to the function call to launch iSEE() with the specified configuration. This package currently works seamlessly with the sets of panels provided by the iSEE and iSEEu packages, but can be extended to accommodate the usage of any custom panel (e.g. from iSEEde, iSEEpathways, or any panel developed independently by the user).

Installation

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("iSEEfier")

Details

MaintainerNajla Abassi <abassi.nejla96@gmail.com>
AuthorNajla Abassi [aut, cre] (ORCID: <https://orcid.org/0000-0001-8357-0938>), Federico Marini [aut] (ORCID: <https://orcid.org/0000-0003-3252-7758>)
LicenseMIT + file LICENSE
URLhttps://github.com/NajlaAbassi/iSEEfier
Bug Reportshttps://github.com/NajlaAbassi/iSEEfier/issues
Downloads rank193
Source branchRELEASE_3_23
biocViewsCellBasedAssays, Clustering, DimensionReduction, FeatureExtraction, GUI, GeneExpression, ImmunoOncology, ShinyApps, SingleCell, Software, Transcription, Transcriptomics, Visualization

Documentation

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Dependencies

Depends: R (>= 4.1.0)

Imports: iSEE, iSEEu, methods, ggplot2, igraph, rlang, stats, SummarizedExperiment, SingleCellExperiment, visNetwork, BiocBaseUtils

Suggests: knitr, rmarkdown, scater, scRNAseq, org.Mm.eg.db, scuttle, BiocStyle, testthat (>= 3.0.0)