iModMix

Integrative Modules for Multi-Omics Data

Bioconductor version: 3.23 · Package version: 1.2.0

The iModMix network-based method offers an integrated framework for analyzing multi-omics data, including metabolomics, proteomics, and transcriptomics data, enabling the exploration of intricate molecular associations within heterogeneous biological systems.

Installation

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("iModMix")

Details

Maintainer	Isis Narvaez-Bandera <isis.narvaez@upr.edu>
Author	Isis Narvaez-Bandera [aut, cre] (ORCID: <https://orcid.org/0000-0001-7320-618X>)
License	GPL-3
URL	https://github.com/biodatalab/iModMix
Bug Reports	https://github.com/biodatalab/iModMix/issues
Downloads rank	118
Source branch	RELEASE_3_23
biocViews	Clustering, GeneExpression, Metabolomics, Network, PrincipalComponent, Proteomics, Software, Transcriptomics, Visualization

Documentation

iModMix -integrative Modules for Multi-omics data

Download

Source package

Dependencies

Depends: R (>= 4.5.0)

Imports: config (>= 0.3.2), golem (>= 0.4.1), shiny (>= 1.7.5), ComplexHeatmap, DT, RColorBrewer, WGCNA, corrplot, cowplot, dynamicTreeCut, ggplot2, glassoFast, impute, purrr, stringr, tidyr, visNetwork, shinyBS, httr, dplyr, stats, iModMixData, SummarizedExperiment, ExperimentHub (>= 2.99.0)

Suggests: testthat (>= 3.0.0), ggfortify, shinyWidgets, pROC, tuneR, knitr, curl, readxl, reshape2, vroom, here, enrichR, rmarkdown