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iCOBRA

Comparison and Visualization of Ranking and Assignment Methods

Bioconductor version: 3.23 · Package version: 1.40.0

This package provides functions for calculation and visualization of performance metrics for evaluation of ranking and binary classification (assignment) methods. Various types of performance plots can be generated programmatically. The package also contains a shiny application for interactive exploration of results.

Installation

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("iCOBRA")

Details

MaintainerCharlotte Soneson <charlottesoneson@gmail.com>
AuthorCharlotte Soneson [aut, cre] (ORCID: <https://orcid.org/0000-0003-3833-2169>)
LicenseGPL (>=2)
URLhttps://csoneson.github.io/iCOBRA/
Bug Reportshttps://github.com/csoneson/iCOBRA/issues
Downloads rank675
Source branchRELEASE_3_23
biocViewsClassification, Software, Visualization

Documentation

Download

Dependencies

Depends: R (>= 4.4.0)

Imports: shiny (>= 0.9.1.9008), shinydashboard, reshape2, ggplot2 (>= 3.4.0), scales, ROCR, dplyr, DT, limma, methods, UpSetR, utils, rlang, prompter

Suggests: knitr, markdown, rmarkdown, testthat

Reverse dependencies

Suggests Me (1): muscat