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humanHippocampus2024

Access to SRT and snRNA-seq data from spatial_HPC project

Bioconductor version: 3.23 · Package version: 1.4.0

This is an ExperimentHub Data package that helps to access the spatially-resolved transcriptomics and single-nucleus RNA sequencing data. The datasets are generated from adjacent tissue sections of the anterior human hippocampus across ten adult neurotypical donors. The datasets are based on [spatial_hpc](https://github.com/LieberInstitute/spatial_hpc) project by Lieber Institute for Brain Development (LIBD) researchers and collaborators.

Installation

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("humanHippocampus2024")

Details

MaintainerChristine Hou <chris2018hou@gmail.com>
AuthorChristine Hou [aut, cre] (ORCID: <https://orcid.org/0009-0001-5350-0629>)
LicenseArtistic-2.0
URLhttps://github.com/LieberInstitute/spatial_hpc, https://christinehou11.github.io/humanHippocampus2024/
Bug Reportshttps://support.bioconductor.org/t/humanHippocampus2024
Downloads rank96
Source branchRELEASE_3_23
biocViewsExperimentData, ExperimentHub, ExpressionData, RNASeqData, SequencingData, SpatialData, Tissue

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Dependencies

Depends: R (>= 4.4)

Imports: ExperimentHub, SummarizedExperiment, SpatialExperiment

Suggests: testthat (>= 3.0.0), sessioninfo, rmarkdown, knitr, BiocStyle, ExperimentHubData, AnnotationHubData, RefManageR