humanHippocampus2024
Access to SRT and snRNA-seq data from spatial_HPC project
Bioconductor version: 3.23 · Package version: 1.4.0
This is an ExperimentHub Data package that helps to access the spatially-resolved transcriptomics and single-nucleus RNA sequencing data. The datasets are generated from adjacent tissue sections of the anterior human hippocampus across ten adult neurotypical donors. The datasets are based on [spatial_hpc](https://github.com/LieberInstitute/spatial_hpc) project by Lieber Institute for Brain Development (LIBD) researchers and collaborators.
Installation
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("humanHippocampus2024") Details
| Maintainer | Christine Hou <chris2018hou@gmail.com> |
| Author | Christine Hou [aut, cre] (ORCID: <https://orcid.org/0009-0001-5350-0629>) |
| License | Artistic-2.0 |
| URL | https://github.com/LieberInstitute/spatial_hpc, https://christinehou11.github.io/humanHippocampus2024/ |
| Bug Reports | https://support.bioconductor.org/t/humanHippocampus2024 |
| Downloads rank | 96 |
| Source branch | RELEASE_3_23 |
| biocViews | ExperimentData, ExperimentHub, ExpressionData, RNASeqData, SequencingData, SpatialData, Tissue |
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Dependencies
Depends: R (>= 4.4)
Imports: ExperimentHub, SummarizedExperiment, SpatialExperiment
Suggests: testthat (>= 3.0.0), sessioninfo, rmarkdown, knitr, BiocStyle, ExperimentHubData, AnnotationHubData, RefManageR