hoodscanR

Spatial cellular neighbourhood scanning in R

Bioconductor version: 3.23 · Package version: 1.10.0

hoodscanR is an user-friendly R package providing functions to assist cellular neighborhood analysis of any spatial transcriptomics data with single-cell resolution. All functions in the package are built based on the SpatialExperiment object, allowing integration into various spatial transcriptomics-related packages from Bioconductor. The package can result in cell-level neighborhood annotation output, along with funtions to perform neighborhood colocalization analysis and neighborhood-based cell clustering.

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("hoodscanR")