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hicVennDiagram

Venn Diagram for genomic interaction data

Bioconductor version: 3.23 · Package version: 1.10.0

A package to generate high-resolution Venn and Upset plots for genomic interaction data from HiC, ChIA-PET, HiChIP, PLAC-Seq, Hi-TrAC, HiCAR and etc. The package generates plots specifically crafted to eliminate the deceptive visual representation caused by the counts method.

Installation

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("hicVennDiagram")

Details

MaintainerJianhong Ou <jou@morgridge.org>
AuthorJianhong Ou [aut, cre] (ORCID: <https://orcid.org/0000-0002-8652-2488>)
LicenseGPL-3
URLhttps://github.com/jianhong/hicVennDiagram
Bug Reportshttps://github.com/jianhong/hicVennDiagram/issues
Downloads rank193
Source branchRELEASE_3_23
biocViewsDNA3DStructure, HiC, Software, Visualization

Documentation

Download

Dependencies

Depends: R (>= 4.3.0)

Imports: Seqinfo, GenomicRanges, IRanges, InteractionSet, rtracklayer, ggplot2, ComplexUpset, reshape2, eulerr, S4Vectors, methods, utils, htmlwidgets, svglite

Suggests: BiocStyle, knitr, rmarkdown, testthat, ChIPpeakAnno, grid, TxDb.Hsapiens.UCSC.hg38.knownGene