hicVennDiagram
Venn Diagram for genomic interaction data
Bioconductor version: 3.23 · Package version: 1.10.0
A package to generate high-resolution Venn and Upset plots for genomic interaction data from HiC, ChIA-PET, HiChIP, PLAC-Seq, Hi-TrAC, HiCAR and etc. The package generates plots specifically crafted to eliminate the deceptive visual representation caused by the counts method.
Installation
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("hicVennDiagram") Details
| Maintainer | Jianhong Ou <jou@morgridge.org> |
| Author | Jianhong Ou [aut, cre] (ORCID: <https://orcid.org/0000-0002-8652-2488>) |
| License | GPL-3 |
| URL | https://github.com/jianhong/hicVennDiagram |
| Bug Reports | https://github.com/jianhong/hicVennDiagram/issues |
| Downloads rank | 193 |
| Source branch | RELEASE_3_23 |
| biocViews | DNA3DStructure, HiC, Software, Visualization |
Documentation
Download
Dependencies
Depends: R (>= 4.3.0)
Imports: Seqinfo, GenomicRanges, IRanges, InteractionSet, rtracklayer, ggplot2, ComplexUpset, reshape2, eulerr, S4Vectors, methods, utils, htmlwidgets, svglite
Suggests: BiocStyle, knitr, rmarkdown, testthat, ChIPpeakAnno, grid, TxDb.Hsapiens.UCSC.hg38.knownGene