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gtrellis

Genome Level Trellis Layout

Bioconductor version: 3.23 · Package version: 1.44.0

Genome level Trellis graph visualizes genomic data conditioned by genomic categories (e.g. chromosomes). For each genomic category, multiple dimensional data which are represented as tracks describe different features from different aspects. This package provides high flexibility to arrange genomic categories and to add self-defined graphics in the plot.

Installation

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("gtrellis")

Details

MaintainerZuguang Gu <guzuguang@suat-sz.edu.cn>
AuthorZuguang Gu [aut, cre] (ORCID: <https://orcid.org/0000-0002-7395-8709>)
LicenseMIT + file LICENSE
URLhttps://github.com/jokergoo/gtrellis
Downloads rank442
Source branchRELEASE_3_23
biocViewsSequencing, Software, Visualization

Documentation

Download

Dependencies

Depends: R (>= 4.0.0), grid, IRanges, GenomicRanges

Imports: circlize (>= 0.4.8), GetoptLong, grDevices, utils

Suggests: testthat (>= 1.0.0), knitr, RColorBrewer, markdown, rmarkdown, ComplexHeatmap (>= 1.99.0), Cairo, png, jpeg, tiff

Reverse dependencies

Imports Me (1): YAPSA