gtrellis
Genome Level Trellis Layout
Bioconductor version: 3.23 · Package version: 1.44.0
Genome level Trellis graph visualizes genomic data conditioned by genomic categories (e.g. chromosomes). For each genomic category, multiple dimensional data which are represented as tracks describe different features from different aspects. This package provides high flexibility to arrange genomic categories and to add self-defined graphics in the plot.
Installation
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("gtrellis") Details
| Maintainer | Zuguang Gu <guzuguang@suat-sz.edu.cn> |
| Author | Zuguang Gu [aut, cre] (ORCID: <https://orcid.org/0000-0002-7395-8709>) |
| License | MIT + file LICENSE |
| URL | https://github.com/jokergoo/gtrellis |
| Downloads rank | 442 |
| Source branch | RELEASE_3_23 |
| biocViews | Sequencing, Software, Visualization |
Documentation
Download
Dependencies
Depends: R (>= 4.0.0), grid, IRanges, GenomicRanges
Imports: circlize (>= 0.4.8), GetoptLong, grDevices, utils
Suggests: testthat (>= 1.0.0), knitr, RColorBrewer, markdown, rmarkdown, ComplexHeatmap (>= 1.99.0), Cairo, png, jpeg, tiff
Reverse dependencies
Imports Me (1): YAPSA