goseq
Gene Ontology analyser for RNA-seq and other length biased data
Bioconductor version: 3.23 · Package version: 1.64.0
Detects Gene Ontology and/or other user defined categories which are over/under represented in RNA-seq data.
Installation
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("goseq")Details
| Maintainer | Federico Marini <marinif@uni-mainz.de> |
| Author | Matthew Young [aut], Nadia Davidson [aut], Federico Marini [ctb, cre] (ORCID: <https://orcid.org/0000-0003-3252-7758>) |
| License | LGPL (>= 2) |
| URL | https://github.com/federicomarini/goseq |
| Bug Reports | https://github.com/federicomarini/goseq/issues |
| Downloads rank | 1752 |
| Source branch | RELEASE_3_23 |
| biocViews | Annotation, DifferentialExpression, GO, GeneExpression, GeneSetEnrichment, ImmunoOncology, KEGG, Pathways, RNASeq, Sequencing, Software, Transcription |
Documentation
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Dependencies
Depends: R (>= 2.11.0), BiasedUrn, geneLenDataBase (>= 1.9.2)
Imports: mgcv, graphics, stats, utils, AnnotationDbi, GO.db, BiocGenerics, methods, rtracklayer, GenomicFeatures, Seqinfo
Suggests: edgeR, org.Hs.eg.db