glmGamPoi
Fit a Gamma-Poisson Generalized Linear Model
Bioconductor version: 3.23 · Package version: 1.24.0
Fit linear models to overdispersed count data. The package can estimate the overdispersion and fit repeated models for matrix input. It is designed to handle large input datasets as they typically occur in single cell RNA-seq experiments.
Installation
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("glmGamPoi") Details
| Maintainer | Constantin Ahlmann-Eltze <artjom31415@googlemail.com> |
| Author | Constantin Ahlmann-Eltze [aut, cre] (ORCID: <https://orcid.org/0000-0002-3762-068X>), Nathan Lubock [ctb] (ORCID: <https://orcid.org/0000-0001-8064-2465>), Michael Love [ctb] |
| License | GPL-3 |
| URL | https://github.com/const-ae/glmGamPoi |
| Bug Reports | https://github.com/const-ae/glmGamPoi/issues |
| System Requirements | C++17 |
| Downloads rank | 6613 |
| Source branch | RELEASE_3_23 |
| biocViews | RNASeq, Regression, SingleCell, Software |
Documentation
Download
Dependencies
Depends: R (>= 4.1.0)
Imports: Rcpp, beachmat, DelayedMatrixStats, matrixStats, MatrixGenerics, SparseArray (>= 1.5.21), S4Vectors, DelayedArray, HDF5Array, Matrix, SummarizedExperiment, SingleCellExperiment, BiocGenerics, methods, stats, utils, splines, rlang, vctrs
LinkingTo: Rcpp, RcppArmadillo, beachmat, assorthead
Suggests: testthat (>= 2.1.0), zoo, DESeq2, edgeR, limma, MASS, statmod, ggplot2, bench, BiocParallel, knitr, rmarkdown, BiocStyle, TENxPBMCData, muscData, scran, dplyr
Reverse dependencies
Imports Me (3): BASiCStan, lemur, transformGamPoi
Suggests Me (6): DESeq2, DEXSeq, scregclust, scTypeEval, Seurat, singIST