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ginmappeR

Gene Identifier Mapper

Bioconductor version: 3.23 · Package version: 1.8.0

Provides functionalities to translate gene or protein identifiers between state-of-art biological databases: CARD (<https://card.mcmaster.ca/>), NCBI Protein, Nucleotide and Gene (<https://www.ncbi.nlm.nih.gov/>), UniProt (<https://www.uniprot.org/>) and KEGG (<https://www.kegg.jp>). Also offers complementary functionality like NCBI identical proteins or UniProt similar genes clusters retrieval.

Installation

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("ginmappeR")

Details

MaintainerFernando Sola <fsola@us.es>
AuthorFernando Sola [aut, cre] (ORCID: <https://orcid.org/0000-0003-1685-3270>), Daniel Ayala [aut] (ORCID: <https://orcid.org/0000-0003-2095-1009>), Marina Pulido [aut] (ORCID: <https://orcid.org/0000-0003-1633-4294>), Rafael Ayala [aut] (ORCID: <https://orcid.org/0000-0002-9332-4623>), Lorena López-Cerero [aut] (ORCID: <https://orcid.org/0000-0001-8950-4384>), Inma Hernández [aut] (ORCID: <https://orcid.org/0000-0001-8920-6635>), David Ruiz [aut] (ORCID: <https://orcid.org/0000-0003-4460-5493>)
LicenseGPL-3 + file LICENSE
Downloads rank159
Source branchRELEASE_3_23
biocViewsAnnotation, Genetics, KEGG, Software, ThirdPartyClient

Documentation

Download

Dependencies

Imports: KEGGREST, UniProt.ws, XML, rentrez, httr, utils, memoise, cachem, jsonlite, rvest

Suggests: RUnit, BiocGenerics, markdown, knitr