ggtreeExtra
An R Package To Add Geometric Layers On Circular Or Other Layout Tree Of "ggtree"
Bioconductor version: 3.23 · Package version: 1.22.1
'ggtreeExtra' extends the method for mapping and visualizing associated data on phylogenetic tree using 'ggtree'. These associated data can be presented on the external panels to circular layout, fan layout, or other rectangular layout tree built by 'ggtree' with the grammar of 'ggplot2'.
Installation
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("ggtreeExtra") Details
| Maintainer | Shuangbin Xu <xshuangbin@163.com> |
| Author | Shuangbin Xu [aut, cre] (ORCID: <https://orcid.org/0000-0003-3513-5362>), Guangchuang Yu [aut, ctb] (ORCID: <https://orcid.org/0000-0002-6485-8781>) |
| License | GPL (>= 3) |
| URL | https://github.com/YuLab-SMU/ggtreeExtra/ |
| Bug Reports | https://github.com/YuLab-SMU/ggtreeExtra/issues |
| Downloads rank | 2251 |
| Source branch | RELEASE_3_23 |
| biocViews | Annotation, Phylogenetics, Software, Visualization |
Documentation
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Dependencies
Imports: ggplot2 (>= 4.0.0), utils, rlang, ggnewscale, stats, ggtree, tidytree (>= 0.3.9), cli, magrittr, yulab.utils
Suggests: treeio, ggstar, patchwork, knitr, rmarkdown, prettydoc, markdown, testthat (>= 3.0.0), pillar
Reverse dependencies
Imports Me (2): DspikeIn, MicrobiotaProcess
Suggests Me (4): enrichplot, ggmsa, pctax, TransProR