ggseqalign
Minimal Visualization of Sequence Alignments
Bioconductor version: 3.23 · Package version: 1.6.0
Simple visualizations of alignments of DNA or AA sequences as well as arbitrary strings. Compatible with Biostrings and ggplot2. The plots are fully customizable using ggplot2 modifiers such as theme().
Installation
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("ggseqalign") Details
| Maintainer | Simeon Lim Rossmann <simeon.rossmann@nmbu.no> |
| Author | Simeon Lim Rossmann [aut, cre] (ORCID: <https://orcid.org/0000-0003-0435-8221>) |
| License | Artistic-2.0 |
| URL | https://github.com/simeross/ggseqalign |
| Bug Reports | https://github.com/simeross/ggseqalign/issues |
| Downloads rank | 147 |
| Source branch | RELEASE_3_23 |
| biocViews | Alignment, MultipleSequenceAlignment, Software, Visualization |
Documentation
Download
Dependencies
Depends: R (>= 4.4.0)
Imports: pwalign, dplyr, ggplot2
Suggests: Biostrings, BiocStyle, knitr, rmarkdown, testthat (>= 3.0.0)