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ggseqalign

Minimal Visualization of Sequence Alignments

Bioconductor version: 3.23 · Package version: 1.6.0

Simple visualizations of alignments of DNA or AA sequences as well as arbitrary strings. Compatible with Biostrings and ggplot2. The plots are fully customizable using ggplot2 modifiers such as theme().

Installation

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("ggseqalign")

Details

MaintainerSimeon Lim Rossmann <simeon.rossmann@nmbu.no>
AuthorSimeon Lim Rossmann [aut, cre] (ORCID: <https://orcid.org/0000-0003-0435-8221>)
LicenseArtistic-2.0
URLhttps://github.com/simeross/ggseqalign
Bug Reportshttps://github.com/simeross/ggseqalign/issues
Downloads rank147
Source branchRELEASE_3_23
biocViewsAlignment, MultipleSequenceAlignment, Software, Visualization

Documentation

Download

Dependencies

Depends: R (>= 4.4.0)

Imports: pwalign, dplyr, ggplot2

Suggests: Biostrings, BiocStyle, knitr, rmarkdown, testthat (>= 3.0.0)