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ggmanh

Visualization Tool for GWAS Result

Bioconductor version: 3.23 · Package version: 1.16.0

Manhattan plot and QQ Plot are commonly used to visualize the end result of Genome Wide Association Study. The "ggmanh" package aims to keep the generation of these plots simple while maintaining customizability. Main functions include manhattan_plot, qqunif, and thinPoints.

Installation

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("ggmanh")

Details

MaintainerJohn Lee <swannyy.stat@gmail.com>
AuthorJohn Lee [aut, cre], John Lee [aut] (AbbVie), Xiuwen Zheng [ctb, dtc]
LicenseMIT + file LICENSE
Downloads rank280
Source branchRELEASE_3_23
biocViewsGenetics, GenomeWideAssociation, Software, Visualization

Documentation

Download

Dependencies

Depends: methods, ggplot2

Imports: gdsfmt, ggrepel, grDevices, paletteer, RColorBrewer, rlang, scales, SeqArray (>= 1.32.0), stats, tidyr, dplyr, pals, magrittr

Suggests: BiocStyle, rmarkdown, knitr, testthat (>= 3.0.0), GenomicRanges

Reverse dependencies

Suggests Me (2): plotthis, SAIGEgds