ggkegg
Analyzing and visualizing KEGG information using the grammar of graphics
Bioconductor version: 3.23 · Package version: 1.10.0
This package aims to import, parse, and analyze KEGG data such as KEGG PATHWAY and KEGG MODULE. The package supports visualizing KEGG information using ggplot2 and ggraph through using the grammar of graphics. The package enables the direct visualization of the results from various omics analysis packages.
Installation
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("ggkegg")Details
| Maintainer | Noriaki Sato <nori@hgc.jp> |
| Author | Noriaki Sato [cre, aut] |
| License | MIT + file LICENSE |
| URL | https://github.com/noriakis/ggkegg |
| Bug Reports | https://github.com/noriakis/ggkegg/issues |
| Downloads rank | 559 |
| Source branch | RELEASE_3_23 |
| biocViews | DataImport, KEGG, Pathways, Software |
Documentation
Download
Dependencies
Depends: R (>= 4.3.0), ggplot2, ggraph, XML, igraph, tidygraph
Imports: BiocFileCache, data.table, dplyr, magick, patchwork, shadowtext, stringr, tibble, methods, utils, stats, grDevices, gtable
Suggests: knitr, clusterProfiler, bnlearn, rmarkdown, BiocStyle, AnnotationDbi, testthat (>= 3.0.0)