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gg4way

4way Plots of Differential Expression

Bioconductor version: 3.23 · Package version: 1.10.0

4way plots enable a comparison of the logFC values from two contrasts of differential gene expression. The gg4way package creates 4way plots using the ggplot2 framework and supports popular Bioconductor objects. The package also provides information about the correlation between contrasts and significant genes of interest.

Installation

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("gg4way")

Details

MaintainerBenjamin I Laufer <blaufer@gmail.com>
AuthorBenjamin I Laufer [aut, cre], Brad A Friedman [aut]
LicenseMIT + file LICENSE
URLhttps://github.com/ben-laufer/gg4way
Bug Reportshttps://github.com/ben-laufer/gg4way/issues
Downloads rank218
Source branchRELEASE_3_23
biocViewsDifferentialExpression, GeneExpression, RNASeq, Sequencing, SingleCell, Software, Transcription, Visualization

Documentation

Download

Dependencies

Depends: R (>= 4.3.0), ggplot2

Imports: DESeq2, dplyr, edgeR, ggrepel, glue, janitor, limma, magrittr, methods, purrr, rlang, scales, stats, stringr, tibble, tidyr

Suggests: airway, BiocStyle, knitr, org.Hs.eg.db, rmarkdown, testthat, vdiffr