getDEE2

Programmatic access to the DEE2 RNA expression dataset

Bioconductor version: 3.23 · Package version: 1.22.0

Digital Expression Explorer 2 (or DEE2 for short) is a repository of processed RNA-seq data in the form of counts. It was designed so that researchers could undertake re-analysis and meta-analysis of published RNA-seq studies quickly and easily. As of April 2020, over 1 million SRA datasets have been processed. This package provides an R interface to access these expression data. More information about the DEE2 project can be found at the project homepage (http://dee2.io) and main publication (https://doi.org/10.1093/gigascience/giz022).

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("getDEE2")