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geneplast.data

Input data for the geneplast package via AnnotationHub

Bioconductor version: 3.23 · Package version: 0.99.9

The package geneplast.data provides datasets from different sources via AnnotationHub to use in geneplast pipelines. The datasets have species, phylogenetic trees, and orthology relationships among eukaryotes from different orthologs databases.

Installation

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("geneplast.data")

Details

MaintainerLeonardo Campos <leofields@gmail.com>
AuthorLeonardo Campos [aut, cre], Danilo Imparato [aut], Rodrigo Dalmolin [aut], Mauro Castro [aut]
LicenseArtistic-2.0
Downloads rank57
Source branchRELEASE_3_23
biocViewsAnnotationData, AnnotationHub, GeneRegulation, Genetics, SystemsBiology

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Dependencies

Depends: R (>= 4.0)

Imports: ape, treeio, tibble, tidyr, dplyr, readr, purrr, igraph, geneplast, BiocFileCache

Suggests: geneplast, BiocGenerics, BiocStyle, knitr, rmarkdown

Reverse dependencies

Suggests Me (1): geneplast