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geNetClassifier

Classify diseases and build associated gene networks using gene expression profiles

Bioconductor version: 3.23 · Package version: 1.52.0

Comprehensive package to automatically train and validate a multi-class SVM classifier based on gene expression data. Provides transparent selection of gene markers, their coexpression networks, and an interface to query the classifier.

Installation

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("geNetClassifier")

Details

MaintainerSara Aibar <saibar@usal.es>
AuthorSara Aibar, Celia Fontanillo and Javier De Las Rivas. Bioinformatics and Functional Genomics Group. Cancer Research Center (CiC-IBMCC, CSIC/USAL). Salamanca. Spain.
LicenseGPL (>= 2)
URLhttp://www.cicancer.org
Downloads rank412
Source branchRELEASE_3_23
biocViewsClassification, DifferentialExpression, Microarray, Software

Documentation

Download

Dependencies

Depends: R (>= 2.10.1), Biobase (>= 2.5.5), EBarrays, minet, methods

Imports: e1071, graphics, grDevices

Suggests: leukemiasEset, RUnit, BiocGenerics

Enhances: RColorBrewer, igraph, infotheo

Reverse dependencies

Imports Me (2): bioCancer, canceR