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gVenn

Proportional Venn and UpSet Diagrams for Gene Sets and Genomic Regions

Bioconductor version: 3.23 · Package version: 1.2.0

Tools to compute and visualize overlaps between gene sets or genomic regions. Venn diagrams with proportional areas are provided, while UpSet plots are recommended for larger numbers of sets. The package supports GRanges and GRangesList inputs, and integrates with analysis workflows for ChIP-seq, ATAC-seq, and other genomic interval data. It generates clean, interpretable, and publication-ready figures.

Installation

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("gVenn")

Details

MaintainerChristophe Tav <christophe.tav@gmail.com>
AuthorChristophe Tav [aut, cre] (ORCID: <https://orcid.org/0000-0001-8808-9617>)
LicenseMIT + file LICENSE
URLhttps://github.com/ckntav/gVenn, https://ckntav.github.io/gVenn/
Bug Reportshttps://github.com/ckntav/gVenn/issues
Downloads rank144
Source branchRELEASE_3_23
biocViewsATACSeq, ChIPSeq, DataRepresentation, Epigenetics, Sequencing, Software, Visualization

Documentation

Download

Dependencies

Depends: R (>= 4.5.0)

Imports: ComplexHeatmap, eulerr, GenomicRanges, IRanges, lubridate, methods, rtracklayer, stringr, writexl

Suggests: testthat (>= 3.0.0), ggplot2, withr, knitr, rmarkdown

Reverse dependencies

Suggests Me (1): MetaHD