gVenn
Proportional Venn and UpSet Diagrams for Gene Sets and Genomic Regions
Bioconductor version: 3.23 · Package version: 1.2.0
Tools to compute and visualize overlaps between gene sets or genomic regions. Venn diagrams with proportional areas are provided, while UpSet plots are recommended for larger numbers of sets. The package supports GRanges and GRangesList inputs, and integrates with analysis workflows for ChIP-seq, ATAC-seq, and other genomic interval data. It generates clean, interpretable, and publication-ready figures.
Installation
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("gVenn") Details
| Maintainer | Christophe Tav <christophe.tav@gmail.com> |
| Author | Christophe Tav [aut, cre] (ORCID: <https://orcid.org/0000-0001-8808-9617>) |
| License | MIT + file LICENSE |
| URL | https://github.com/ckntav/gVenn, https://ckntav.github.io/gVenn/ |
| Bug Reports | https://github.com/ckntav/gVenn/issues |
| Downloads rank | 144 |
| Source branch | RELEASE_3_23 |
| biocViews | ATACSeq, ChIPSeq, DataRepresentation, Epigenetics, Sequencing, Software, Visualization |
Documentation
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Dependencies
Depends: R (>= 4.5.0)
Imports: ComplexHeatmap, eulerr, GenomicRanges, IRanges, lubridate, methods, rtracklayer, stringr, writexl
Suggests: testthat (>= 3.0.0), ggplot2, withr, knitr, rmarkdown
Reverse dependencies
Suggests Me (1): MetaHD