gDRutils
A package with helper functions for processing drug response data
Bioconductor version: 3.23 · Package version: 1.10.0
This package contains utility functions used throughout the gDR platform to fit data, manipulate data, and convert and validate data structures. This package also has the necessary default constants for gDR platform. Many of the functions are utilized by the gDRcore package.
Installation
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("gDRutils")Details
| Maintainer | Arkadiusz Gladki <gladki.arkadiusz@gmail.com> |
| Author | Bartosz Czech [aut] (ORCID: <https://orcid.org/0000-0002-9908-3007>), Arkadiusz Gladki [cre, aut] (ORCID: <https://orcid.org/0000-0002-7059-6378>), Aleksander Chlebowski [aut], Marc Hafner [aut] (ORCID: <https://orcid.org/0000-0003-1337-7598>), Pawel Piatkowski [aut], Dariusz Scigocki [aut], Janina Smola [aut], Sergiu Mocanu [aut], Allison Vuong [aut] |
| License | Artistic-2.0 |
| URL | https://github.com/gdrplatform/gDRutils, https://gdrplatform.github.io/gDRutils/ |
| Bug Reports | https://github.com/gdrplatform/gDRutils/issues |
| Downloads rank | 198 |
| Source branch | RELEASE_3_23 |
| biocViews | Infrastructure, Software |
Documentation
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Dependencies
Depends: R (>= 4.2)
Imports: BiocParallel, BumpyMatrix, checkmate, data.table, digest, drc, jsonlite, jsonvalidate, methods, MultiAssayExperiment, S4Vectors, stats, stringr, SummarizedExperiment, qs2, utils
Suggests: BiocManager, BiocStyle, futile.logger, gDRstyle (>= 1.7.1), gDRtestData (>= 1.7.1), IRanges, knitr, lintr, mockery, purrr, rcmdcheck, rmarkdown, scales, testthat, tools, withr, yaml