gDRimport
Package for handling the import of dose-response data
Bioconductor version: 3.23 · Package version: 1.10.0
The package is a part of the gDR suite. It helps to prepare raw drug response data for downstream processing. It mainly contains helper functions for importing/loading/validating dose-response data provided in different file formats.
Installation
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("gDRimport")Details
| Maintainer | Arkadiusz Gladki <gladki.arkadiusz@gmail.com> |
| Author | Arkadiusz Gladki [aut, cre] (ORCID: <https://orcid.org/0000-0002-7059-6378>), Bartosz Czech [aut] (ORCID: <https://orcid.org/0000-0002-9908-3007>), Marc Hafner [aut] (ORCID: <https://orcid.org/0000-0003-1337-7598>), Sergiu Mocanu [aut], Dariusz Scigocki [aut], Allison Vuong [aut], Luca Gerosa [aut] (ORCID: <https://orcid.org/0000-0001-6805-9410>), Janina Smola [aut] |
| License | Artistic-2.0 |
| URL | https://github.com/gdrplatform/gDRimport, https://gdrplatform.github.io/gDRimport/ |
| Bug Reports | https://github.com/gdrplatform/gDRimport/issues |
| Downloads rank | 211 |
| Source branch | RELEASE_3_23 |
| biocViews | DataImport, Infrastructure, Software |
Documentation
- Converting a gDR-generated MultiAssayExperiment object into a PharmacoSet
- Converting PharmacoSet Drug Response Data into gDR object
- gDRimport
Download
Dependencies
Depends: R (>= 4.2)
Imports: assertthat, BumpyMatrix, checkmate, CoreGx, PharmacoGx, data.table, futile.logger, gDRutils (>= 1.7.1), magrittr, methods, MultiAssayExperiment, readxl, rio, S4Vectors, stats, stringi, SummarizedExperiment, tibble, tools, utils, XML, yaml, openxlsx, qs2
Suggests: BiocStyle, gDRtestData (>= 1.7.1), gDRstyle (>= 1.7.1), knitr, purrr, testthat